TY - GEN
T1 - Flame -flexible and accurate motif detector for continuous pattern discovery in sequence data sets
AU - Selvaraj, Rajalakshmi
AU - Kuthadi, Venu Madhav
AU - Ranjan, Abhishek
N1 - Publisher Copyright:
© 2012 IADIS.
PY - 2012
Y1 - 2012
N2 - The basis of bioinformatics is the extraction of motifs from the sequences. Pattern emerging continuously either over a string or inside the same string are the significant objects for identifying. The continuous patterns are referred to be motifs and their detection is referred as motif interference or motif extraction. The most significant problem in biology is the motif search. This issue normally needs a voluminous data for detecting the short patterns of interest. Basically, we look at the issue of mining structured motifs which can allow the variable length gaps between simple motif components. Here in this research paper, we present a novel algorithm which is mainly used to detect the continuous pattern with a diversity of definitions of motif model and it is called as FLAME (Flexible and Accurate motif Detector). It also detects the pattern if it is exist so far. By using both the synthetic and real dataset we demonstrate that the FLAME algorithm is scalable, fast and outperforms the present algorithms that are available.
AB - The basis of bioinformatics is the extraction of motifs from the sequences. Pattern emerging continuously either over a string or inside the same string are the significant objects for identifying. The continuous patterns are referred to be motifs and their detection is referred as motif interference or motif extraction. The most significant problem in biology is the motif search. This issue normally needs a voluminous data for detecting the short patterns of interest. Basically, we look at the issue of mining structured motifs which can allow the variable length gaps between simple motif components. Here in this research paper, we present a novel algorithm which is mainly used to detect the continuous pattern with a diversity of definitions of motif model and it is called as FLAME (Flexible and Accurate motif Detector). It also detects the pattern if it is exist so far. By using both the synthetic and real dataset we demonstrate that the FLAME algorithm is scalable, fast and outperforms the present algorithms that are available.
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M3 - Conference contribution
AN - SCOPUS:84944036377
T3 - Proceedings of the IADIS International Conference Information Systems 2012, IS 2012
SP - 362
EP - 367
BT - Proceedings of the IADIS International Conference Information Systems 2012, IS 2012
A2 - Isaias, Pedro
A2 - Rodrigues, Luis
A2 - Nunes, Miguel Baptista
A2 - Powell, Philip
PB - IADIS
T2 - IADIS International Conference on Information Systems 2012, IS 2012
Y2 - 10 March 2012 through 12 March 2012
ER -